RNA 3D Hub //

Motif IL_01003.1 Version IL_01003.1 of this group appears in releases 4.0 to 4.0

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 5 61-62-53-43-5
1 IL_6WBR_0016WBR0.44160Isolated non-canonical cWW pairBRNA (94-MER)G26G27A28*U41A42C43cWWcWW
2 IL_5T3K_0015T3K0.43281Isolated non-canonical cWW pairA+BRNA (17-mer) + RNA (16-mer)G7A8G10*C26A27C28cWWcwWcWW
3 IL_8P9A_4188P9A0.31391Isolated non-canonical cWW pairsR SSU rRNAG957U958U960*G868A869C870cWWncWW
4 IL_8GLP_2368GLP0.31871S2 SSU rRNAG1014U1015U1017*G925A926C927cWWncWW
5 IL_8GLP_2258GLP0.36020S2 SSU rRNAC1162C1163G1164*C663A664G665cWWcWWcWW
6 IL_8GLP_0038GLP0.27970L8+L5 5.8S rRNAG139C140C141*G16A17C18cWWcWWcWW
7 IL_1Z79_0021Z790.31090Isolated non-canonical cWW pairA+BRNA 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3'A5A5M6U7*A10A11U12cWWcWWcWW
8 IL_7ECN_0027ECN0.34650Isolated non-canonical cWW pairB+ARNA (12-mer)G3C4C5*G8A9C10cWWcWW
9 IL_7ECN_0017ECN0.27630Isolated non-canonical cWW pairA+BRNA (12-mer)G3C4C5*G8A9C10cWWcWW
10 IL_7ECK_0157ECK0.25150Isolated non-canonical cWW pairJ+IDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')A3C4U5*A8A9U10cWWncWWancWW
11 IL_7ECK_0137ECK0.26570Isolated non-canonical cWW pairI+JDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')A3C4U5*A8A9U10cWWncWWacWW
12 IL_8GLP_0308GLP0.28230L5 LSU rRNAG497C498G499*C655C656C657cWWcWW
13 IL_8B0X_0938B0X0.35950Isolated non-canonical cWW pair (H)a LSU rRNAU872U873U874*A907U908G909cWWcwWcWW
14 IL_7KJT_0017KJT0.30090Isolated non-canonical cWW pairA tRNAG69C70C71*G2C3C4ncWWcWW
15 IL_8CRE_3918CRE0.20210Isolated non-canonical cWW pairCM SSU rRNAU35C36U37*A469U470A471cWWcWWcWW
16 IL_8P9A_3748P9A0.27340Isolated non-canonical cWW pairsR SSU rRNAA471U472A473*U35C36U37cWWcWWcWW
17 IL_1ZZ5_0021ZZ50.26870Isolated non-canonical cWW pairA+BRNA (15-mer) + RNA (14-mer)G10U11C12*G24U25C26cWWncWwcWW
18 IL_4ZC7_0044ZC70.24850Isolated non-canonical cWW pairA+BRNA duplexG19U20C21*G28U29C30cWWncWwcWW
19 IL_4LFB_0694LFB0.23450Isolated non-canonical cWW pairA SSU rRNAG1494U1495C1496*G1405U14065MC1407cWWncwWcWW
20 IL_4PDQ_0014PDQ0.26240Isolated non-canonical cWW pairB+ARNA (23-mer)G42U43C44*G5U6C7cWWcWW
21 IL_8P9A_3408P9A0.16370Isolated non-canonical cWW pairAR LSU rRNAA2926C2927C2928*G2918A2919U2920cWWcWWcWW
22 IL_8OI5_1128OI50.17270Isolated non-canonical cWW pair (H)1 LSU rRNAA2898C2899C2900*G2890A2891U2892cWWcWWcWW
23 IL_8GLP_1528GLP0.17990L5 LSU rRNAA4503C4504C4505*G4495A4496U4497cWWcWWcWW
24 IL_4PDQ_0044PDQ0.19890Isolated non-canonical cWW pairA+BRNA (23-mer)G19U20C21*G28U29C30cWWncwWcWW
25 IL_9E6Q_0969E6Q0.209201 LSU rRNAC2836C2837A2838*U2799A2800G2801cWWcWWcWW
26 IL_8P9A_3508P9A0.24480Isolated non-canonical cWW pairAR LSU rRNAA3168U3169A3170*U3280U3281U3282cWWcwWcWW
27 IL_5AY2_0035AY20.22420Isolated non-canonical cWW pairB+ARNA (12-mer)A3C4U5*A8C9U10cWWcWW
28 IL_5AY2_0015AY20.23170Isolated non-canonical cWW pairB+ARNA (12-mer)A8C9U10*A3C4U5cWWcWW
29 IL_1ZH5_0011ZH50.22160Isolated non-canonical cWW pairC+DRNA (9-mer)C3U4G5*C3U4G5cWWncwWcWW
30 IL_7ECO_0067ECO0.23370Isolated non-canonical cWW pairE+FRNA (12-mer)G8U9C10*G3U4C5cWWcWW
31 IL_7ECO_0057ECO0.24180Isolated non-canonical cWW pairF+ERNA (12-mer)G8U9C10*G3U4C5cWWcWW
32 IL_4JGN_0034JGN0.22110Isolated non-canonical cWW pairERNA (20-mer)C511||||4_555U512||||4_555G513||||4_555*C511U512G513cWWncWwcWW
33 IL_4J39_0014J390.24470Isolated non-canonical cWW pairBRNA (19-mer)G9||||4_555C10||||4_555C11||||4_555*G9C10C11cWWcWW
34 IL_6SX2_0016SX20.29530Isolated non-canonical cWW pairD+CRNA (19-mer)U9U10A11*U9U10A11cWWncwWcWW
35 IL_8P9A_4348P9A0.22680Isolated non-canonical cWW pairsR SSU rRNAG1448U1449U1450*G1213U1214C1215cWWncwWncWW
36 IL_3GM7_0053GM70.14980Isolated non-canonical cWW pairG+HRNA (18-mer)C13U14G15*C4U5G6cWWcWW
37 IL_2ZKO_0012ZKO0.18280Isolated non-canonical cWW pairD+CRNA (21-mer)U9U10A11*U9U10A11cWWcWW
38 IL_3GM7_0013GM70.16440Isolated non-canonical cWW pairH+GRNA (18-mer)C16U17G18*C1U2G3cWWcWW
39 IL_4E48_0054E480.17550Isolated non-canonical cWW pairA+BRNA (20-mer)C14U15G16*C25U26G27cWWcWW
40 IL_8GLP_2558GLP0.17440S2 SSU rRNAG1510U1511C1512*G1270C1271C1272cWWcWW
41 IL_7Y2P_0027Y2P0.22650Isolated non-canonical cWW pairA+BRNA (13-mer)C9U10G11*C3U4G5cWWcWW
42 IL_7Y2P_0017Y2P0.23020Isolated non-canonical cWW pairB+ARNA (13-mer)C9U10G11*C3U4G5cWWcWW
43 IL_7QQP_0087QQP0.23150Isolated non-canonical cWW pairC+AAAVS1 off-target3 target strandDT5DC6DT7*A14C15A16cWWncWBcWW
44 IL_7KFN_0017KFN0.23340Isolated non-canonical cWW pairC+BGli1 1W5 23mer RNAC8C9C10*G14A15G16cWWcWWcWW
45 IL_8CRE_4488CRE0.22760Isolated non-canonical cWW pairCM SSU rRNAG1434U1435U1436*G1198U1199C1200cWWncwWncWW
46 IL_3SZX_0033SZX0.17590Isolated non-canonical cWW pairA+BRNA (19-mer)C13U14G15*C7U8G9cWWncwWcWW
47 IL_8OI5_1218OI50.19540Isolated non-canonical cWW pair (H)1 LSU rRNAG3249C3250G3251*C3134A3135C3136cWWncWWacWW
48 IL_7A0S_0317A0S0.22700Isolated non-canonical cWW pairX LSU rRNAG963A964G965*U974C975C976cWWcWWcWW
49 IL_9DFE_0339DFE0.21530Isolated non-canonical cWW pair1A LSU rRNAG952A953G954*U963C964C965cWWcWWcWW
50 IL_8GLP_1978GLP0.22380S2 SSU rRNAU110A111U112*A349C350G351cWWcWWacWW
51 IL_9D5J_0029D5J0.20340Isolated non-canonical cWW pairD+CRNA Bottom Strand containing deoxyinosine complementary to a guanosine adjacent to the target siteC17C18C19*G14A15G16cWWcWWcWW
52 IL_1Z79_0011Z790.17350Isolated non-canonical cWW pairB+ARNA 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3'A5A5M6U7*A10A11U12cWWcWWcWW
53 IL_8GLP_1498GLP0.18120L5 LSU rRNAG4489C4490G4491*C4466A4467U4468cWWncWWacWW
54 IL_8P9A_3378P9A0.16020Isolated non-canonical cWW pairAR LSU rRNAG2912C2913G2914*C2889A2890U2891cWWncWWacWW
55 IL_8OI5_1108OI50.167801 LSU rRNAG2884C2885G2886*C2861A2862U2863cWWncWWacWW
56 IL_9AXU_1019AXU0.191102 LSU rRNAG3007C3008G3009*C2984A2985U2986cWWncWWacWW
57 IL_4WF9_0424WF90.17380Isolated non-canonical cWW pairX LSU rRNAG1081C1082G1083*C1160A1161C1162cWWncWWcWW
58 IL_9E6Q_0369E6Q0.160401 LSU rRNAC1043A1044G1045*C970C971G972cWWncWWacWW
59 IL_4WF9_0834WF90.18070Isolated non-canonical cWW pairX LSU rRNAC2111C2112U2113*A2260A2261G2262cWWncWWacWW
60 IL_4V9F_1054V9F0.16400Isolated non-canonical cWW pair9 5S rRNAC107C108G109*C72A73G74cWWcWWcWW
61 IL_5Y7M_0075Y7M0.16920Isolated non-canonical cWW pairDRNA (52-MER)A11C12C13*G37A38U39cWWcWWcWW
62 IL_5CCB_0015CCB0.14030Isolated non-canonical cWW pairN tRNAA31C32U33*A37A38U39cWWcWWcWW
63 IL_4E59_0014E590.13320Isolated non-canonical cWW pairB+ARNA duplex containing CCG repeatsC2C3G4*C2C3G4cWWncWBcWW
64 IL_3GM7_0023GM70.14630Isolated non-canonical cWW pairG+HRNA (18-mer)C4U5G6*C13U14G15cWWcWW
65 IL_8GLP_0398GLP0.14220L5 LSU rRNAC922C923C924*G740C741G742cWWncWBcWW
66 IL_3GM7_0043GM70.18370Isolated non-canonical cWW pairG+HRNA (18-mer)C10U11G12*C7U8G9cWWncwWcWW
67 IL_3GM7_0033GM70.16250Isolated non-canonical cWW pairH+GRNA (18-mer)C10U11G12*C7U8G9cWWncwWcWW
68 IL_5VCI_0025VCI0.13800Isolated non-canonical cWW pairB+ARNA (12-mer)C7U8G9*C4U5G6cWWncwWcWW
69 IL_3SZX_0013SZX0.17410Isolated non-canonical cWW pairA+BRNA (19-mer)C7U8G9*C13U14G15cWWcWW
70 IL_3GM7_0063GM70.14080Isolated non-canonical cWW pairG+HRNA (18-mer)C16U17G18*C1U2G3cWWncwWcWW
71 IL_1YZ9_0021YZ90.12550Isolated non-canonical cWW pairF+ERNA (11-mer)A15C16U17*A4C5U6cWWncWBcWW
72 IL_4E48_0034E480.14770Isolated non-canonical cWW pairA+BRNA (20-mer)C8U9G10*C31U32G33cWWcWW
73 IL_4E48_0044E480.15890Isolated non-canonical cWW pairB+ARNA (20-mer)C28U29G30*C11U12G13cWWncwWcWW
74 IL_4E48_0024E480.14520Isolated non-canonical cWW pairB+ARNA (20-mer)C34U35G36*C5U6G7cWWcWW
75 IL_4E48_0014E480.16430Isolated non-canonical cWW pairA+BRNA (20-mer)C2U3G4*C37U38G39cWWcWW
76 IL_1UN6_0051UN60.16110Isolated non-canonical cWW pairF5S RIBOSOMAL RNAC79U80G81*C95U96G97cWWncwWcWW
77 IL_8GLP_2838GLP0.16750S2 SSU rRNAC1739C1740U1741*A1793C1794G1795cWWncWBcWW
78 IL_5AOX_0015AOX0.16310Isolated non-canonical cWW pairCALU JO CONSENSUS RNAG9C10G11*C18A19C20cWWcWWcWW
79 IL_8GLP_2338GLP0.14480S2 SSU rRNAG910C911C912*G874A875C876cWWcWWcWW
80 IL_9AXU_0079AXU0.17490Isolated non-canonical cWW pair (H)2 LSU rRNAC147C148G149*C125U126G127cWWcWWcWW
81 IL_7ZLQ_0027ZLQ0.15290Isolated non-canonical cWW pairE+DRNA (13-mer)G5C6C7*G5C6C7cWWncWBcWW
82 IL_8GLP_2278GLP0.07510Isolated non-canonical cWW pair (H)S2 SSU rRNAG673C674U675*A1030A2M1031C1032cWWcWWcWW
83 IL_8CRE_4258CRE0.00000Isolated non-canonical cWW pairCM SSU rRNAG622C623U624*A958A959C960cWWcWWcWW
84 IL_8P9A_4068P9A0.06180Isolated non-canonical cWW pairsR SSU rRNAG624C625U626*A973A974C975cWWcWWcWW
85 IL_8P9A_3088P9A0.13400Isolated non-canonical cWW pairAR LSU rRNAG1940C1941U1942*A2106A2107C2108cWWcWWcWW
86 IL_8GLP_1098GLP0.12210Isolated non-canonical cWW pair (H)L5 LSU rRNAG2889C2890U2891*A3610A3611C3612cWWcWWcWW
87 IL_9AXU_0769AXU0.13810Isolated non-canonical cWW pair (H)2 LSU rRNAG1995C1996U1997*A2194A2195C2196cWWcWWcWW
88 IL_8OI5_0828OI50.13150Isolated non-canonical cWW pair (H)1 LSU rRNAG1936C1937U1938*A2084A2085C2086cWWcWWcWW
89 IL_5Y85_0065Y850.14640Isolated non-canonical cWW pairD+CDNA/RNA (50-MER)G4C5C6*G13A14C15cWWcWWcWW
90 IL_4NGF_0024NGF0.17390Isolated non-canonical cWW pairG+HRNA (17-mer)G7U8C9*G7U8C9cWWncwWcWW
91 IL_3SZX_0023SZX0.17330Isolated non-canonical cWW pairB+ARNA (19-mer)C10U11G12*C10U11G12cWWncwWcWW
92 IL_8GLP_2708GLP0.21760S2 SSU rRNAA1537C1538U1539*A1594U1595U1596cWWcWWcWW
93 IL_4ZC7_0014ZC70.22820Isolated non-canonical cWW pairA+BRNA duplexG5U6C7*G42U43C44cWWncwWcWW
94 IL_4E48_0064E480.18590Isolated non-canonical cWW pairB+ARNA (20-mer)C22U23G24*C17U18G19cWWncwWcWW
95 IL_4JGN_0024JGN0.13050Isolated non-canonical cWW pairERNA (20-mer)C508U509G510*C514||||4_555U515||||4_555G516||||4_555cWWncwWcWW
96 IL_9AXU_0209AXU0.16340Isolated non-canonical cWW pair (H)2 LSU rRNAG824C825U826*A693U694C695cWWcWWcWW
97 IL_9AXU_0449AXU0.20090Isolated non-canonical cWW pair (H)2 LSU rRNAA1167C1168U1169*A1151U1152U1153cWWcWWcWW
98 IL_9AXU_0429AXU0.21900Isolated non-canonical cWW pair (H)2 LSU rRNAG1119U1120G1121*C1101U1102U1103cWWncwWcWW
99 IL_8P9A_4548P9A0.24600Isolated non-canonical cWW pairsR SSU rRNAG1757U1758C1759*G1642U1643C1644cWWcWW
100 IL_8GLP_2768GLP0.17110S2 SSU rRNAG1826U1827C1828*G1706U1707C1708cWWcWW
101 IL_8CRE_4688CRE0.18690Isolated non-canonical cWW pairCM SSU rRNAG1744U1745C1746*G1629U1630C1631cWWcWW
102 IL_8B0X_1778B0X0.17670Isolated non-canonical cWW pair (H)A SSU rRNAG1494U1495C1496*G1405U14065MC1407cWWcWW
103 IL_4V83_2354V830.30570Isolated non-canonical cWW pairCVdomain 3 of PSIC IGR IRES RNAC6153U6154C6155*G6173U6174G6175cWWncWwcWW
104 IL_7VYX_0017VYX0.29450Isolated non-canonical cWW pairCsgRNAG53C54C55*G11A12C13ncWWncWWacWW
105 IL_4V9K_0644V9K0.22670Isolated non-canonical cWW pairAW tRNAC62C63G64*C50A51G52cWWncWWacWW
106 IL_7A0S_0267A0S0.22610Isolated non-canonical cWW pairX LSU rRNAA936C937G938*C864A865U866cWWcWWcWW
107 IL_8OI5_0298OI50.23390Isolated non-canonical cWW pair (H)1 LSU rRNAC799C800G801*C934U935G936cWWcWWcWW
108 IL_8P9A_2558P9A0.22590Isolated non-canonical cWW pairAR LSU rRNAC803C804G805*C938U939G940cWWcWWcWW
109 IL_8GLP_2898GLP0.19920Isolated non-canonical cWW pair (H)L5 LSU rRNAC1520C1521OMG1522*C1655U1656G1657cWWcWWcWW
110 IL_9AXU_0259AXU0.20320Isolated non-canonical cWW pair (H)2 LSU rRNAC835C836G837*C970U971G972cWWcWWcWW
111 IL_7A0S_0147A0S0.19290Isolated non-canonical cWW pairX LSU rRNAU685C686G687*C819U820A821cWWcWWcWW
112 IL_4WF9_0204WF90.19280Isolated non-canonical cWW pairX LSU rRNAC717C718G719*C851U852G853cWWcWWcWW
113 IL_9DFE_0159DFE0.19880Isolated non-canonical cWW pair1A LSU rRNAC672C673G674*C806U807G808cWWcWWcWW
114 IL_8B0X_0798B0X0.21840a LSU rRNAC674C675G676*C808U809G810cWWcWWcWW
115 IL_8P9A_2748P9A0.27160Isolated non-canonical cWW pairAR LSU rRNAA1136C1137U1138*A1120U1121U1122cWWcWWcWW
116 IL_8OI5_0498OI50.24020Isolated non-canonical cWW pair (H)1 LSU rRNAA1132C1133U1134*A1116U1117U1118cWWcWWcWW
117 IL_8OI5_0238OI50.19530Isolated non-canonical cWW pair (H)1 LSU rRNAG666U667C668*G788C789U790cWWcWWcWW
118 IL_8P9A_2498P9A0.20420Isolated non-canonical cWW pairAR LSU rRNAG668U669C670*G792C793U794cWWcWWcWW
119 IL_7A0S_0207A0S0.19260Isolated non-canonical cWW pairX LSU rRNAG754C755C756*G767U768C769cWWcWWcWW
120 IL_7ECP_0047ECP0.21470D+CRNA (12-mer)G3C4C5*G8U9C10cWWcWWcWW
121 IL_4LFB_0634LFB0.26620Isolated non-canonical cWW pairA SSU rRNAG1435U1436C1437*G1464C1465C1466cWWcWWcWW
122 IL_4LFB_0104LFB0.23130Isolated non-canonical cWW pairA SSU rRNAC186C187C188*G190|||KU190|||LG191cWWcWWcWW
123 IL_3RW6_0043RW60.26870Isolated non-canonical cWW pairHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAC24C25G26*C33U34G35cWWcWWcWW
124 IL_4V9F_0174V9F0.21320Isolated non-canonical cWW pair0 LSU rRNAA597C598G599*C558U559U560cWWcWWcWW
125 IL_7ECP_0037ECP0.20360C+DRNA (12-mer)G3C4C5*G8U9C10cWWcWWcWW
126 IL_8P9A_2728P9A0.26590Isolated non-canonical cWW pairAR LSU rRNAC1069U1070U1071*G1087U1088G1089cWWncwWcWW
127 IL_8OI5_0478OI50.20290Isolated non-canonical cWW pair (H)1 LSU rRNAC1065U1066U1067*G1083U1084G1085cWWncwWcWW
128 IL_8P9A_2378P9A0.22300Isolated non-canonical cWW pairAR LSU rRNAC141C142G143*C125U126G127cWWcWWcWW
129 IL_8OI5_0088OI50.21130Isolated non-canonical cWW pair (H)1 LSU rRNAC140C141G142*C124U125G126cWWcWWcWW
130 IL_4V9F_0234V9F0.22830Isolated non-canonical cWW pair0 LSU rRNAC763C764G765*C899U900G901cWWcWWcWW
131 IL_8P9A_4328P9A0.24300Isolated non-canonical cWW pairsR SSU rRNAC1173C1174U1175*G1464C1465G1466cWWncWBcWW
132 IL_8CRE_4468CRE0.27900Isolated non-canonical cWW pairCM SSU rRNAC1158C1159U1160*G1450C1451G1452cWWncWBcWW
133 IL_8P9A_3308P9A0.25350Isolated non-canonical cWW pairAR LSU rRNAG2863A2864U2865*G2824C2825U2826cWWcWWacWW
134 IL_8GLP_2178GLP0.26930S2 SSU rRNAG535A536C537*G547C548C549cWWcWWancWW
135 IL_7A0S_0427A0S0.28210Isolated non-canonical cWW pairX LSU rRNAC1252C1253G1254*C1218C1219G1220cWWncBWcWW
136 IL_8GLP_3218GLP0.26000Isolated non-canonical cWW pair (H)S2 SSU rRNAA519A520A521*PSU34C35PSU36cWWcWWcWW
137 IL_9AXU_1059AXU0.24340Isolated non-canonical cWW pair (H)2 LSU rRNAA3021C3022C3023*G3013A3014U3015cWWncWWcWW
138 IL_4M6D_0114M6D0.30880Isolated non-canonical cWW pairHaptamerG12G13C14*G46A47C48cWWcWWncWW
139 IL_9M86_0059M860.29810DRNA (31-MER)G52G53C54*G69A70C71cWWcWWcWW
140 IL_8OI5_0708OI50.27080Isolated non-canonical cWW pair (H)1 LSU rRNAG1657G1658C1659*G1782A1783C1784cWWcWWcWW
141 IL_9AXU_0649AXU0.28760Isolated non-canonical cWW pair (H)2 LSU rRNAG1696G1697C1698*G1827A1828C1829cWWcWWcWW
142 IL_8P9A_3548P9A0.32000Isolated non-canonical cWW pairAR LSU rRNAG3252G3253G3254*C3233A3234C3235cWWcWWcWW
143 IL_8OI5_0458OI50.33850Isolated non-canonical cWW pair (H)1 LSU rRNAA1005G1006A1007*U1035A1036U1037cWWcWWcWW
144 IL_8P9A_2708P9A0.30920Isolated non-canonical cWW pairAR LSU rRNAA1009G1010A1011*U1039A1040U1041cWWcWWcWW
145 IL_8GLP_0258GLP0.30900L5 LSU rRNAC691A692C693*G462A463G464cWWcWwcWW
146 IL_8GLP_2348GLP0.29640S2 SSU rRNAC877G878C879*G907A908G909cWWcWWcWW
147 IL_4LFB_0594LFB0.36840Isolated non-canonical cWW pairA SSU rRNAG1486G1487G1488*C1412A1413U1414cWWcWWcWW
148 IL_8B0X_0608B0X0.32440Isolated non-canonical cWW pair (H)A SSU rRNAG1486G1487G1488*C1412A1413U1414cWWcWWcWW
149 IL_4LFB_0064LFB0.36080Isolated non-canonical cWW pairA SSU rRNAC99A101G102*C67G68G69cWWcWWcWW
150 IL_8CRE_4568CRE0.37760Isolated non-canonical cWW pairCM SSU rRNAU1275G1276G1277*C1308G1309A1310cWWcWW
151 IL_8CRE_4708CRE0.36310Isolated non-canonical cWW pairCM SSU rRNAG1735A1736A1737*U1637A1638C1639cWWncwWcWW
152 IL_8GLP_2788GLP0.35000Isolated non-canonical cWW pair (H)S2 SSU rRNAG1817A1818A1819*U1714A1715C1716cWWcwWcWW
153 IL_4J50_0024J500.33900Isolated non-canonical cWW pairB+ARNA (19-mer)C10A11G12*C10A11G12cWWcWW
154 IL_5ED1_0025ED10.28270Isolated non-canonical cWW pairC+BRNA (23-mer)G9A10C11*G13A14C15cWWcwWcWW
155 IL_8D29_0018D290.31190Isolated non-canonical cWW pairCRNA (34-MER)A29G30C31*G4A5U6ncWWcWWcWW
156 IL_3DIL_0063DIL0.30380Isolated non-canonical cWW pairARNA (174-MER)C137A138C139*G115G116G117cWWcWWcWW
157 IL_3D0U_0063D0U0.29020Isolated non-canonical cWW pairALysine Riboswitch RNAC134A135C136*G112G113G114cWWcWWcWW
158 IL_8PFQ_0018PFQ0.28950Isolated non-canonical cWW pairA+BChains: A,BC3G4A5*U28A29G30cWWcWWcWW
159 IL_8PFQ_0038PFQ0.29020Isolated non-canonical cWW pairA+BChains: A,BU8A9G10*C23G24A25cWWcWWcWW
160 IL_2R8S_0012R8S0.28470Isolated non-canonical cWW pairRP4-P6 RNA RIBOZYME DOMAINC208A210C211*G110G111G112cWWcWWcWW
161 IL_8P9A_2968P9A0.28670Isolated non-canonical cWW pairAR LSU rRNAG1661G1662C1663*G1786A1787C1788cWWcWWcWW
162 IL_8P9A_4618P9A0.34050Isolated non-canonical cWW pairsR SSU rRNAG1672G1673C1674*G1727A1728C1729cWWcWWcWW
163 IL_3IVK_0023IVK0.35180Isolated non-canonical cWW pairMclass I ligase productA102A103C104*G87G88U89cWWcWWcWWncWW
164 IL_3HHN_0043HHN0.30440Isolated non-canonical cWW pairEClass I ligase ribozyme, self-ligation productG87G88U89*A102A103C104cWWcWWcWW
165 IL_8GLP_1738GLP0.30440L5 LSU rRNAG4992G4993G4994*C5057A5058C5059cWWcWWcWW
166 IL_8P9A_4568P9A0.29450Isolated non-canonical cWW pairsR SSU rRNAG1748A1749A1750*U1650A1651C1652cWWcwWcWW
167 IL_5MSF_0015MSF0.27341Isolated non-canonical cWW pairRRNA (18-mer)C13||||P_1A14||||P_1C15||||P_1*G3||||P_1G4||||P_1G6||||P_1cWWcWWcWW
168 IL_9AXU_1309AXU0.30951Isolated non-canonical cWW pair (H)3 5S rRNAA92A93C94*G82G83U85cWWcWWcWW
169 IL_8QYX_1718QYX0.31521Isolated non-canonical cWW pair (H)B2 5S rRNAG82A83G85*C92G93C94cWWcWWcWW
170 IL_8P9A_3708P9A0.33131Isolated non-canonical cWW pairAS 5S rRNAC94A95U96*A84G85G87cWWcWWcWW
171 IL_8OI5_1408OI50.32881Isolated non-canonical cWW pair3 5S rRNAA84G85G87*C94A95U96cWWcWWcWW
172 IL_3CUL_0083CUL0.32610Isolated non-canonical cWW pairCRNA (92-MER)U57G58G59*C87A88G89ncWWancWWcWW
173 IL_1MFQ_0031MFQ0.40340Isolated non-canonical cWW pairA SRP RNAA163G164G165*U132A133U134cWWncWWcWW
174 IL_8P9A_4448P9A0.44131Isolated non-canonical cWW pairsR SSU rRNAG1383A1384G1385*C1339A1341C1342cWWncwWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUG*CUG22
GUC*GUC11
CCG*CUG11
GCC*GAC6
GCU*AAC6
GGC*GAC6
ACC*GAU5
GCG*CAU4
ACU*AUU4
CCG*CAG3
ACU*AAU3
GCC*GCC3
ACU*ACU3
GCG*CAC3
GCC*GUC3
GAA*UAC3
CAC*GGG3
GUUU*GAC2
GUC*GU(5MC)2
UUA*UUA2
GUU*GUC2
GUC*GCC2
CCC*GAG2
GAG*UCC2
CCG*CCG2
GUC*GCU2
CUU*GUG2
CCU*GCG2
GGG*CAC2
AGA*UAU2
GGG*CAU2
GGA*UAC1
GAAG*CAC1
AU*AAU1
GCG*CCC1
UUU*AUG1
UCU*AUA1
AUA*UCU1
CCA*UAG1
AUA*UUU1
TCT*ACA1
UAU*ACG1
A(A5M)U*AAU1
CAG*CCG1
CCU*AAG1
CCC*GCG1
CCU*ACG1
GCU*AC1
GCU*AUC1
GUG*CUU1
CUC*GUG1
ACG*CAU1
CC(OMG)*CUG1
UCG*CUA1
CCC*GUG1
ACG*CUU1
GAU*GCU1
GAC*GCC1
AAA*(PSU)C(PSU)1
CAC*GAG1
CGC*GAG1
CAG*CGG1
UGG*CGA1
CAG*CAG1
GAC*GAC1
AGC*GAU1
CGA*UAG1
UAG*CGA1
AAC*GGU1
GGU*AAC1
CAC*GGAG1
AAC*GGUU1
GAUG*CGC1
CAU*AGUG1
AGUG*CAU1
UGG*CAG1
AGG*UAU1
GAG*CUAC1
Non-Watson-Crick part of the motif
SequenceCounts
U*U45
C*A35
C*U24
G*A19
C*C14
A*C7
A*A6
A*G6
U*C5
UU*A2
(A5M)*A2
A*GU2
AA*A1
C*(A2M)1
G*G1
A*GA1
AU*G1
GU*A1
A*UA1

Release history

Release4.0
Date2025-08-13
StatusNew id, > 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated non-canonical cWW pair (121)
  • Isolated non-canonical cWW pair (H) (28)
  • (25)
    • Basepair signature
    cWW-cWW-cWW
    Heat map statistics
    Min 0.02 | Avg 0.30 | Max 0.69
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