IL_8EYU_002

3D structure

PDB id

8EYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Beetroot dimer bound to DFAME

Experimental method

X-RAY DIFFRACTION

Resolution

1.95 Å

Loop

Sequence

AGGUGGGUGGU*AU

Length

13 nucleotides

Bulged bases

8EYU|1|A|U|19, 8EYU|1|A|U|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Part of G-quadruplex

Broad Annotation

No text annotation

Motif group

IL_19852.1

Basepair signature

cWW-tWH-cWW-cWH-cWH-cWH

Number of instances in this motif group

1

Unit IDs

8EYU|1|A|A|16
8EYU|1|A|G|17
8EYU|1|A|G|18
8EYU|1|A|U|19
8EYU|1|A|G|20
8EYU|1|A|G|21
8EYU|1|A|G|22
8EYU|1|A|U|23
8EYU|1|A|G|24
8EYU|1|A|G|25
8EYU|1|A|U|26
*
8EYU|1|A|A|37
8EYU|1|A|U|38

Current chains

Chain A

RNA (49-MER)

Nearby chains

Chain B

RNA (49-MER)