IL_8F4O_002
3D structure
- PDB id
- 8F4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Apo structure of the TPP riboswitch aptamer domain
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UG*CUGAGAAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8F4O_002 not in the Motif Atlas
- Geometric match to IL_8F4O_006
- Geometric discrepancy: 0.2184
- The information below is about IL_8F4O_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38394.1
- Basepair signature
- cWW-tWH-cWW-L-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
8F4O|1|A|U|20
8F4O|1|A|G|21||A
*
8F4O|1|A|C|38
8F4O|1|A|U|39
8F4O|1|A|G|40
8F4O|1|A|A|41
8F4O|1|A|G|42
8F4O|1|A|A|43
8F4O|1|A|A|44
8F4O|1|A|A|45
Current chains
- Chain A
- TPP riboswitch aptamer domain
Nearby chains
- Chain B
- TPP riboswitch (THI element)
Coloring options: