IL_8FC1_085

3D structure

PDB id

8FC1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

8FC1|1|1A|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC1_085 not in the Motif Atlas

Homologous match to IL_7RQB_087

Geometric discrepancy: 0.1537

The information below is about IL_7RQB_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC1|1|1A|C|2129
8FC1|1|1A|U|2130
8FC1|1|1A|G|2131
8FC1|1|1A|U|2132
8FC1|1|1A|G|2133
8FC1|1|1A|A|2134
8FC1|1|1A|A|2135
8FC1|1|1A|C|2136
*
8FC1|1|1A|G|2155
8FC1|1|1A|G|2156
8FC1|1|1A|G|2157
8FC1|1|1A|A|2158
8FC1|1|1A|G|2159

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains