IL_8FC1_258

3D structure

PDB id

8FC1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC1_258 not in the Motif Atlas

Homologous match to IL_7RQB_086

Geometric discrepancy: 0.2149

The information below is about IL_7RQB_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC1|1|2A|G|2124
8FC1|1|2A|G|2125
8FC1|1|2A|A|2126
8FC1|1|2A|G|2127
*
8FC1|1|2A|C|2161
8FC1|1|2A|G|2162
8FC1|1|2A|C|2163
8FC1|1|2A|C|2164
8FC1|1|2A|G|2165
8FC1|1|2A|G|2166
8FC1|1|2A|U|2167
8FC1|1|2A|G|2168
8FC1|1|2A|A|2169
8FC1|1|2A|A|2170
8FC1|1|2A|A|2171
8FC1|1|2A|U|2172
8FC1|1|2A|A|2173
8FC1|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains