IL_8FC1_274

3D structure

PDB id

8FC1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

8FC1|1|2A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC1_274 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0336

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8FC1|1|2A|U|2636
8FC1|1|2A|U|2637
8FC1|1|2A|G|2638
8FC1|1|2A|A|2639
8FC1|1|2A|G|2640
*
8FC1|1|2A|C|2774
8FC1|1|2A|A|2775
8FC1|1|2A|A|2776
8FC1|1|2A|G|2777
8FC1|1|2A|A|2778
8FC1|1|2A|U|2779
8FC1|1|2A|G|2780
8FC1|1|2A|A|2781
8FC1|1|2A|G|2782

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13