IL_8FC1_318

3D structure

PDB id

8FC1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

8FC1|1|2a|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC1_318 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.0989

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

8FC1|1|2a|G|683
8FC1|1|2a|A|684
8FC1|1|2a|G|685
8FC1|1|2a|U|686
8FC1|1|2a|A|687
8FC1|1|2a|G|688
*
8FC1|1|2a|C|699
8FC1|1|2a|G|700
8FC1|1|2a|C|701
8FC1|1|2a|A|702
8FC1|1|2a|G|703
8FC1|1|2a|A|704
8FC1|1|2a|U|705
8FC1|1|2a|A|706
8FC1|1|2a|C|707

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11