IL_8FC1_361

3D structure

PDB id

8FC1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

8FC1|1|2A|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC1_361 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.0647

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

8FC1|1|2A|C|844
8FC1|1|2A|G|845
8FC1|1|2A|C|846
8FC1|1|2A|U|847
8FC1|1|2A|G|848
8FC1|1|2A|A|849
8FC1|1|2A|C|850
*
8FC1|1|2A|G|927
8FC1|1|2A|G|928
8FC1|1|2A|U|930
8FC1|1|2A|G|931
8FC1|1|2A|G|932
8FC1|1|2A|A|933
8FC1|1|2A|G|934

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15

Chain 23

50S ribosomal protein L30