3D structure

PDB id
8FC2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
GAAAC*GAGAUAGC
Length
13 nucleotides
Bulged bases
8FC2|1|1A|G|801, 8FC2|1|1A|G|805
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FC2_017 not in the Motif Atlas
Homologous match to IL_7RQB_018
Geometric discrepancy: 0.0318
The information below is about IL_7RQB_018
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_17470.6
Basepair signature
cWW-tWW-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

8FC2|1|1A|G|674
8FC2|1|1A|A|675
8FC2|1|1A|A|676
8FC2|1|1A|A|677
8FC2|1|1A|C|678
*
8FC2|1|1A|G|799
8FC2|1|1A|A|800
8FC2|1|1A|G|801
8FC2|1|1A|A|802
8FC2|1|1A|U|803
8FC2|1|1A|A|804
8FC2|1|1A|G|805
8FC2|1|1A|C|806

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1F
50S ribosomal protein L4
Chain 1P
50S ribosomal protein L15

Coloring options:


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