IL_8FC2_085

3D structure

PDB id

8FC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC2_085 not in the Motif Atlas

Homologous match to IL_7RQB_086

Geometric discrepancy: 0.1442

The information below is about IL_7RQB_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC2|1|1A|G|2124
8FC2|1|1A|G|2125
8FC2|1|1A|A|2126
8FC2|1|1A|G|2127
*
8FC2|1|1A|C|2161
8FC2|1|1A|G|2162
8FC2|1|1A|C|2163
8FC2|1|1A|C|2164
8FC2|1|1A|G|2165
8FC2|1|1A|G|2166
8FC2|1|1A|U|2167
8FC2|1|1A|G|2168
8FC2|1|1A|A|2169
8FC2|1|1A|A|2170
8FC2|1|1A|A|2171
8FC2|1|1A|U|2172
8FC2|1|1A|A|2173
8FC2|1|1A|C|2174

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains