IL_8FC3_106

3D structure

PDB id

8FC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC3_106 not in the Motif Atlas

Homologous match to IL_7RQB_103

Geometric discrepancy: 0.0399

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8FC3|1|1A|C|2652
8FC3|1|1A|U|2653
8FC3|1|1A|A|2654
8FC3|1|1A|G|2655
8FC3|1|1A|U|2656
8FC3|1|1A|A|2657
8FC3|1|1A|C|2658
*
8FC3|1|1A|G|2663
8FC3|1|1A|G|2664
8FC3|1|1A|A|2665
8FC3|1|1A|C|2666
8FC3|1|1A|C|2667
8FC3|1|1A|G|2668

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1H

50S ribosomal protein L6