3D structure

PDB id
8FC3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
GCAAU*AC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FC3_134 not in the Motif Atlas
Geometric match to IL_5J7L_018
Geometric discrepancy: 0.1194
The information below is about IL_5J7L_018
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_03109.3
Basepair signature
cWW-cWS-tWH-cWW-L
Number of instances in this motif group
6

Unit IDs

8FC3|1|1a|G|371
8FC3|1|1a|C|372
8FC3|1|1a|A|373
8FC3|1|1a|A|374
8FC3|1|1a|U|375
*
8FC3|1|1a|A|389
8FC3|1|1a|C|390

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1p
30S ribosomal protein S16

Coloring options:


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