3D structure

PDB id
8FC3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
GGG*CUAC
Length
7 nucleotides
Bulged bases
8FC3|1|2A|A|896
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FC3_212 not in the Motif Atlas
Geometric match to IL_3KTW_002
Geometric discrepancy: 0.2914
The information below is about IL_3KTW_002
Detailed Annotation
Isolated non-canonical cWW with bulges
Broad Annotation
Isolated non-canonical cWW with bulges
Motif group
IL_43275.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
30

Unit IDs

8FC3|1|2A|G|880
8FC3|1|2A|G|881
8FC3|1|2A|G|882
*
8FC3|1|2A|C|894
8FC3|1|2A|U|895
8FC3|1|2A|A|896
8FC3|1|2A|C|897

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2Q
50S ribosomal protein L16
Chain 2Z
50S ribosomal protein L25

Coloring options:


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