IL_8FC3_265

3D structure

PDB id

8FC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

8FC3|1|2A|G|2116

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC3_265 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.3767

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

8FC3|1|2A|G|2110
8FC3|1|2A|C|2111
8FC3|1|2A|G|2112
8FC3|1|2A|U|2113
8FC3|1|2A|A|2114
8FC3|1|2A|G|2115
8FC3|1|2A|G|2116
8FC3|1|2A|A|2117
8FC3|1|2A|U|2118
8FC3|1|2A|A|2119
8FC3|1|2A|G|2120
*
8FC3|1|2A|C|2178
8FC3|1|2A|C|2179

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains