IL_8FC3_308

3D structure

PDB id

8FC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

8FC3|1|2a|U|244, 8FC3|1|2a|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC3_308 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0787

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

8FC3|1|2a|C|242
8FC3|1|2a|A|243
8FC3|1|2a|U|244
8FC3|1|2a|C|245
8FC3|1|2a|A|246
8FC3|1|2a|G|247
*
8FC3|1|2a|C|277
8FC3|1|2a|G|278
8FC3|1|2a|A|279
8FC3|1|2a|C|280
8FC3|1|2a|G|281
8FC3|1|2a|A|282
8FC3|1|2a|C|283
8FC3|1|2a|G|284

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2q

30S ribosomal protein S17