3D structure

PDB id
8FC3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
GUUG*CACUC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FC3_343 not in the Motif Atlas
Homologous match to IL_6CZR_158
Geometric discrepancy: 0.4237
The information below is about IL_6CZR_158
Detailed Annotation
Minor groove platform
Broad Annotation
Minor groove platform
Motif group
IL_40144.1
Basepair signature
cWW-L-R-L-cWW-L
Number of instances in this motif group
1

Unit IDs

8FC3|1|2a|G|1124
8FC3|1|2a|U|1125
8FC3|1|2a|U|1126
8FC3|1|2a|G|1127
*
8FC3|1|2a|C|1145
8FC3|1|2a|A|1146
8FC3|1|2a|C|1147
8FC3|1|2a|U|1148
8FC3|1|2a|C|1149

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2i
30S ribosomal protein S9
Chain 2j
30S ribosomal protein S10

Coloring options:


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