3D structure

PDB id
8FC3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
GU(5MC)AC*GAAGUC
Length
11 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FC3_351 not in the Motif Atlas
Homologous match to IL_5J7L_060
Geometric discrepancy: 0.2457
The information below is about IL_5J7L_060
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8FC3|1|2a|G|1405
8FC3|1|2a|U|1406
8FC3|1|2a|5MC|1407
8FC3|1|2a|A|1408
8FC3|1|2a|C|1409
*
8FC3|1|2a|G|1491
8FC3|1|2a|A|1492
8FC3|1|2a|A|1493
8FC3|1|2a|G|1494
8FC3|1|2a|U|1495
8FC3|1|2a|C|1496

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2A
Large subunit ribosomal RNA; LSU rRNA
Chain 2l
30S ribosomal protein S12
Chain 2y
Ribosome-associated inhibitor A

Coloring options:


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