IL_8FC3_376

3D structure

PDB id

8FC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

8FC3|1|2A|A|1045, 8FC3|1|2A|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC3_376 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.3934

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8FC3|1|2A|C|1043
8FC3|1|2A|G|1044
8FC3|1|2A|A|1045
8FC3|1|2A|A|1046
8FC3|1|2A|G|1047
8FC3|1|2A|A|1048
8FC3|1|2A|C|1049
8FC3|1|2A|A|1050
8FC3|1|2A|G|1051
*
8FC3|1|2A|U|1108
8FC3|1|2A|C|1109
8FC3|1|2A|G|1110
8FC3|1|2A|A|1111
8FC3|1|2A|G|1112

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6