3D structure

PDB id
8FC3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CGAAGACAG*UCGAG
Length
14 nucleotides
Bulged bases
8FC3|1|2A|A|1045, 8FC3|1|2A|A|1046
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FC3_376 not in the Motif Atlas
Homologous match to IL_5J7L_284
Geometric discrepancy: 0.3934
The information below is about IL_5J7L_284
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_99692.2
Basepair signature
cWW-tSS-tSH-L-R-R-L-cWW-L-L
Number of instances in this motif group
6

Unit IDs

8FC3|1|2A|C|1043
8FC3|1|2A|G|1044
8FC3|1|2A|A|1045
8FC3|1|2A|A|1046
8FC3|1|2A|G|1047
8FC3|1|2A|A|1048
8FC3|1|2A|C|1049
8FC3|1|2A|A|1050
8FC3|1|2A|G|1051
*
8FC3|1|2A|U|1108
8FC3|1|2A|C|1109
8FC3|1|2A|G|1110
8FC3|1|2A|A|1111
8FC3|1|2A|G|1112

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 29
50S ribosomal protein L36
Chain 2H
50S ribosomal protein L6

Coloring options:


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