IL_8FC4_031

3D structure

PDB id

8FC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GCU*AAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC4_031 not in the Motif Atlas

Homologous match to IL_7RQB_031

Geometric discrepancy: 0.0528

The information below is about IL_7RQB_031

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8FC4|1|1A|G|875
8FC4|1|1A|C|876
8FC4|1|1A|U|877
*
8FC4|1|1A|A|899
8FC4|1|1A|A|900
8FC4|1|1A|A|901
8FC4|1|1A|C|902

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1Q

50S ribosomal protein L16

Chain 1Z

50S ribosomal protein L25