IL_8FC4_087

3D structure

PDB id

8FC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC4_087 not in the Motif Atlas

Homologous match to IL_7RQB_086

Geometric discrepancy: 0.1527

The information below is about IL_7RQB_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC4|1|1A|G|2124
8FC4|1|1A|G|2125
8FC4|1|1A|A|2126
8FC4|1|1A|G|2127
*
8FC4|1|1A|C|2161
8FC4|1|1A|G|2162
8FC4|1|1A|C|2163
8FC4|1|1A|C|2164
8FC4|1|1A|G|2165
8FC4|1|1A|G|2166
8FC4|1|1A|U|2167
8FC4|1|1A|G|2168
8FC4|1|1A|A|2169
8FC4|1|1A|A|2170
8FC4|1|1A|A|2171
8FC4|1|1A|U|2172
8FC4|1|1A|A|2173
8FC4|1|1A|C|2174

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains