IL_8FC4_088

3D structure

PDB id

8FC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

8FC4|1|1A|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC4_088 not in the Motif Atlas

Homologous match to IL_7RQB_087

Geometric discrepancy: 0.1325

The information below is about IL_7RQB_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC4|1|1A|C|2129
8FC4|1|1A|U|2130
8FC4|1|1A|G|2131
8FC4|1|1A|U|2132
8FC4|1|1A|G|2133
8FC4|1|1A|A|2134
8FC4|1|1A|A|2135
8FC4|1|1A|C|2136
*
8FC4|1|1A|G|2155
8FC4|1|1A|G|2156
8FC4|1|1A|G|2157
8FC4|1|1A|A|2158
8FC4|1|1A|G|2159

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains