IL_8FC4_152
3D structure
- PDB id
- 8FC4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.45 Å
Loop
- Sequence
- GGAGUACG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FC4_152 not in the Motif Atlas
- Homologous match to IL_4LFB_034
- Geometric discrepancy: 0.0733
- The information below is about IL_4LFB_034
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8FC4|1|1a|G|887
8FC4|1|1a|G|888
8FC4|1|1a|A|889
8FC4|1|1a|G|890
8FC4|1|1a|U|891
8FC4|1|1a|A|892
8FC4|1|1a|C|893
8FC4|1|1a|G|894
*
8FC4|1|1a|U|905
8FC4|1|1a|G|906
8FC4|1|1a|A|907
8FC4|1|1a|A|908
8FC4|1|1a|A|909
8FC4|1|1a|C|910
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1l
- 30S ribosomal protein S12
- Chain 1q
- 30S ribosomal protein S17
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