IL_8FC4_285

3D structure

PDB id

8FC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

8FC4|1|2A|U|2689

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC4_285 not in the Motif Atlas

Homologous match to IL_9DFE_104

Geometric discrepancy: 0.0797

The information below is about IL_9DFE_104

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

8FC4|1|2A|U|2687
8FC4|1|2A|U|2688
8FC4|1|2A|U|2689
8FC4|1|2A|C|2690
8FC4|1|2A|C|2691
*
8FC4|1|2A|G|2718
8FC4|1|2A|G|2719
8FC4|1|2A|U|2720
8FC4|1|2A|A|2721
8FC4|1|2A|G|2722

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2R

50S ribosomal protein L17

Chain 2T

50S ribosomal protein L19