IL_8FC5_051
3D structure
- PDB id
- 8FC5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.65 Å
Loop
- Sequence
- GCAAU*AGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FC5_051 not in the Motif Atlas
- Homologous match to IL_7A0S_047
- Geometric discrepancy: 0.2304
- The information below is about IL_7A0S_047
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_83150.2
- Basepair signature
- cWW-tHH-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
8FC5|1|1A|G|1319
8FC5|1|1A|C|1320
8FC5|1|1A|A|1321
8FC5|1|1A|A|1322
8FC5|1|1A|U|1323
*
8FC5|1|1A|A|1331
8FC5|1|1A|G|1332
8FC5|1|1A|C|1333
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1W
- 50S ribosomal protein L22
- Chain 1X
- 50S ribosomal protein L23
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