3D structure

PDB id
8FC5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.65 Å

Loop

Sequence
GGAAUU*AGGAAC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FC5_143 not in the Motif Atlas
Homologous match to IL_4LFB_030
Geometric discrepancy: 0.0524
The information below is about IL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04668.2
Basepair signature
cWW-cWW-cWW-L-R-L-R-cWW
Number of instances in this motif group
8

Unit IDs

8FC5|1|1a|G|673
8FC5|1|1a|G|674
8FC5|1|1a|A|675
8FC5|1|1a|A|676
8FC5|1|1a|U|677
8FC5|1|1a|U|678
*
8FC5|1|1a|A|712
8FC5|1|1a|G|713
8FC5|1|1a|G|714
8FC5|1|1a|A|715
8FC5|1|1a|A|716
8FC5|1|1a|C|717

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1D
50S ribosomal protein L2
Chain 1f
30S ribosomal protein S6
Chain 1k
30S ribosomal protein S11
Chain 1r
30S ribosomal protein S18

Coloring options:


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