3D structure

PDB id
8FC5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.65 Å

Loop

Sequence
GCA*UUCCC
Length
8 nucleotides
Bulged bases
8FC5|1|1a|C|934
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FC5_150 not in the Motif Atlas
Homologous match to IL_4LFB_037
Geometric discrepancy: 0.1012
The information below is about IL_4LFB_037
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_47078.3
Basepair signature
cWW-cWS-L-cWW-L
Number of instances in this motif group
4

Unit IDs

8FC5|1|1a|G|933
8FC5|1|1a|C|934
8FC5|1|1a|A|935
*
8FC5|1|1a|U|1380
8FC5|1|1a|U|1381
8FC5|1|1a|C|1382
8FC5|1|1a|C|1383
8FC5|1|1a|C|1384

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1g
30S ribosomal protein S7
Chain 1i
30S ribosomal protein S9
Chain 1y
Ribosome-associated inhibitor A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.3063 s