IL_8FC5_186

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

8FC5|1|2A|U|504, 8FC5|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC5_186 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.043

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

8FC5|1|2A|G|481
8FC5|1|2A|A|482
8FC5|1|2A|A|483
8FC5|1|2A|C|484
*
8FC5|1|2A|G|496
8FC5|1|2A|A|497
8FC5|1|2A|G|498
8FC5|1|2A|U|499
8FC5|1|2A|G|500
8FC5|1|2A|A|501
8FC5|1|2A|A|502
8FC5|1|2A|A|503
8FC5|1|2A|U|504
8FC5|1|2A|A|505
8FC5|1|2A|G|506
8FC5|1|2A|A|507
8FC5|1|2A|G|508
8FC5|1|2A|C|509

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24