IL_8FC5_255

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

8FC5|1|2A|G|2116, 8FC5|1|2A|A|2117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC5_255 not in the Motif Atlas

Geometric match to IL_1MZP_002

Geometric discrepancy: 0.3635

The information below is about IL_1MZP_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

8FC5|1|2A|G|2110
8FC5|1|2A|C|2111
8FC5|1|2A|G|2112
8FC5|1|2A|U|2113
8FC5|1|2A|A|2114
8FC5|1|2A|G|2115
8FC5|1|2A|G|2116
8FC5|1|2A|A|2117
8FC5|1|2A|U|2118
8FC5|1|2A|A|2119
8FC5|1|2A|G|2120
*
8FC5|1|2A|C|2178
8FC5|1|2A|C|2179

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains