IL_8FC5_257

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC5_257 not in the Motif Atlas

Homologous match to IL_7RQB_086

Geometric discrepancy: 0.2436

The information below is about IL_7RQB_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FC5|1|2A|G|2124
8FC5|1|2A|G|2125
8FC5|1|2A|A|2126
8FC5|1|2A|G|2127
*
8FC5|1|2A|C|2161
8FC5|1|2A|G|2162
8FC5|1|2A|C|2163
8FC5|1|2A|C|2164
8FC5|1|2A|G|2165
8FC5|1|2A|G|2166
8FC5|1|2A|U|2167
8FC5|1|2A|G|2168
8FC5|1|2A|A|2169
8FC5|1|2A|A|2170
8FC5|1|2A|A|2171
8FC5|1|2A|U|2172
8FC5|1|2A|A|2173
8FC5|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains