IL_8FC5_295

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

8FC5|1|2a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC5_295 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.0646

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

8FC5|1|2a|G|148
8FC5|1|2a|A|149
8FC5|1|2a|C|150
8FC5|1|2a|A|151
8FC5|1|2a|A|152
8FC5|1|2a|C|153
*
8FC5|1|2a|G|168
8FC5|1|2a|C|169
8FC5|1|2a|U|170
8FC5|1|2a|A|171
8FC5|1|2a|A|172
8FC5|1|2a|U|173
8FC5|1|2a|C|174

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20