IL_8FC5_330
3D structure
- PDB id
- 8FC5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.65 Å
Loop
- Sequence
- GG*UCAGC
- Length
- 7 nucleotides
- Bulged bases
- 8FC5|1|2a|C|1200, 8FC5|1|2a|A|1201
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FC5_330 not in the Motif Atlas
- Homologous match to IL_4LFB_045
- Geometric discrepancy: 0.1217
- The information below is about IL_4LFB_045
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_95583.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
8FC5|1|2a|G|1057
8FC5|1|2a|G|1058
*
8FC5|1|2a|U|1199
8FC5|1|2a|C|1200
8FC5|1|2a|A|1201
8FC5|1|2a|G|1202
8FC5|1|2a|C|1203
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2c
- 30S ribosomal protein S3
- Chain 2j
- 30S ribosomal protein S10
- Chain 2n
- 30S ribosomal protein S14 type Z
- Chain 2y
- Ribosome-associated inhibitor A
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