IL_8FC5_353

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

8FC5|1|1A|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC5_353 not in the Motif Atlas

Homologous match to IL_9DFE_067

Geometric discrepancy: 0.0445

The information below is about IL_9DFE_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8FC5|1|1A|A|1669
8FC5|1|1A|C|1670
8FC5|1|1A|U|1671
8FC5|1|1A|C|1672
8FC5|1|1A|U|1673
8FC5|1|1A|G|1674
*
8FC5|1|1A|C|1990
8FC5|1|1A|U|1991
8FC5|1|1A|G|1992
8FC5|1|1A|U|1993

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1O

50S ribosomal protein L14