IL_8FC5_361

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

8FC5|1|2A|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC5_361 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.0614

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

8FC5|1|2A|C|844
8FC5|1|2A|G|845
8FC5|1|2A|C|846
8FC5|1|2A|U|847
8FC5|1|2A|G|848
8FC5|1|2A|A|849
8FC5|1|2A|C|850
*
8FC5|1|2A|G|927
8FC5|1|2A|G|928
8FC5|1|2A|U|930
8FC5|1|2A|G|931
8FC5|1|2A|G|932
8FC5|1|2A|A|933
8FC5|1|2A|G|934

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15

Chain 23

50S ribosomal protein L30