IL_8FC6_073

3D structure

PDB id

8FC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC6_073 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.043

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

8FC6|1|1A|U|1851
8FC6|1|1A|C|1852
8FC6|1|1A|A|1853
8FC6|1|1A|A|1854
8FC6|1|1A|G|1855
*
8FC6|1|1A|C|1887
8FC6|1|1A|G|1888
8FC6|1|1A|A|1889
8FC6|1|1A|A|1890
8FC6|1|1A|G|1891

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains