IL_8FC6_301

3D structure

PDB id

8FC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

8FC6|1|2a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FC6_301 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.0756

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8FC6|1|2a|G|148
8FC6|1|2a|A|149
8FC6|1|2a|C|150
8FC6|1|2a|A|151
8FC6|1|2a|A|152
8FC6|1|2a|C|153
*
8FC6|1|2a|G|168
8FC6|1|2a|C|169
8FC6|1|2a|U|170
8FC6|1|2a|A|171
8FC6|1|2a|A|172
8FC6|1|2a|U|173
8FC6|1|2a|C|174

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20