IL_8FIZ_012

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8FIZ|1|AA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1348

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8FIZ|1|AA|G|147
8FIZ|1|AA|G|148
8FIZ|1|AA|A|149
8FIZ|1|AA|U|150
8FIZ|1|AA|A|151
8FIZ|1|AA|A|152
8FIZ|1|AA|C|153
*
8FIZ|1|AA|G|168
8FIZ|1|AA|C|169
8FIZ|1|AA|U|170
8FIZ|1|AA|A|171
8FIZ|1|AA|A|172
8FIZ|1|AA|U|173
8FIZ|1|AA|A|174
8FIZ|1|AA|C|175

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S20