IL_8FIZ_021

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAG*CAGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_021 not in the Motif Atlas

Homologous match to IL_5J7L_021

Geometric discrepancy: 0.1503

The information below is about IL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33323.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8FIZ|1|AA|C|440
8FIZ|1|AA|A|441
8FIZ|1|AA|G|442
*
8FIZ|1|AA|C|492
8FIZ|1|AA|A|493
8FIZ|1|AA|G|494
8FIZ|1|AA|A|495
8FIZ|1|AA|A|496
8FIZ|1|AA|G|497

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AI

30S ribosomal protein S4