IL_8FIZ_023

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_023 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.1512

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

8FIZ|1|AA|G|450
8FIZ|1|AA|A|451
8FIZ|1|AA|A|452
8FIZ|1|AA|G|453
8FIZ|1|AA|G|454
8FIZ|1|AA|G|455
*
8FIZ|1|AA|C|477
8FIZ|1|AA|A|478
8FIZ|1|AA|U|479
8FIZ|1|AA|U|480
8FIZ|1|AA|G|481
8FIZ|1|AA|A|482
8FIZ|1|AA|C|483

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AO

30S ribosomal protein S16