IL_8FIZ_026

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_026 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.1559

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8FIZ|1|AA|C|569
8FIZ|1|AA|G|570
8FIZ|1|AA|U|571
8FIZ|1|AA|A|572
8FIZ|1|AA|A|573
8FIZ|1|AA|A|574
8FIZ|1|AA|G|575
*
8FIZ|1|AA|C|880
8FIZ|1|AA|G|881

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S12

Chain AS

30S ribosomal protein S17