IL_8FIZ_029

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUC*GAUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_029 not in the Motif Atlas

Homologous match to IL_6CZR_361

Geometric discrepancy: 0.2315

The information below is about IL_6CZR_361

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_56539.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

4

Unit IDs

8FIZ|1|AA|G|597
8FIZ|1|AA|U|598
8FIZ|1|AA|C|599
*
8FIZ|1|AA|G|639
8FIZ|1|AA|A|640
8FIZ|1|AA|U|641
8FIZ|1|AA|A|642
8FIZ|1|AA|C|643

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AQ

30S ribosomal protein S8

Chain AS

30S ribosomal protein S17