IL_8FIZ_044

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUC*GAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_044 not in the Motif Atlas

Geometric match to IL_8C3A_070

Geometric discrepancy: 0.3765

The information below is about IL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

8FIZ|1|AA|G|987
8FIZ|1|AA|G|988
8FIZ|1|AA|U|989
8FIZ|1|AA|C|990
*
8FIZ|1|AA|G|1215
8FIZ|1|AA|A|1216
8FIZ|1|AA|C|1217

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S19

Chain AF

30S ribosomal protein S14