IL_8FIZ_049

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

8FIZ|1|AA|C|1200, 8FIZ|1|AA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_049 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.1238

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

8FIZ|1|AA|G|1057
8FIZ|1|AA|G|1058
*
8FIZ|1|AA|U|1199
8FIZ|1|AA|C|1200
8FIZ|1|AA|A|1201
8FIZ|1|AA|U|1202
8FIZ|1|AA|C|1203

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AF

30S ribosomal protein S14

Chain AG

30S ribosomal protein S3

Chain AH

30S ribosomal protein S10