IL_8FIZ_059

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8FIZ|1|AA|C|1400, 8FIZ|1|AA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_059 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.1532

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8FIZ|1|AA|C|1399
8FIZ|1|AA|C|1400
8FIZ|1|AA|G|1401
*
8FIZ|1|AA|C|1501
8FIZ|1|AA|A|1502
8FIZ|1|AA|A|1503
8FIZ|1|AA|G|1504

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AW

mRNA

Chain BB

Transfer RNA; tRNA