IL_8FIZ_073

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_073 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.1245

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8FIZ|1|BA|G|188
8FIZ|1|BA|G|189
8FIZ|1|BA|A|190
8FIZ|1|BA|A|191
8FIZ|1|BA|C|192
8FIZ|1|BA|U|193
8FIZ|1|BA|G|194
*
8FIZ|1|BA|C|201
8FIZ|1|BA|U|202
8FIZ|1|BA|A|203
8FIZ|1|BA|A|204
8FIZ|1|BA|G|205
8FIZ|1|BA|U|206
8FIZ|1|BA|A|207
8FIZ|1|BA|C|208

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BT

50S ribosomal protein L15

Chain DE

50S ribosomal protein L28