IL_8FIZ_074

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_074 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.1249

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8FIZ|1|BA|C|239
8FIZ|1|BA|C|240
8FIZ|1|BA|A|241
8FIZ|1|BA|G|242
8FIZ|1|BA|U|243
8FIZ|1|BA|A|244
8FIZ|1|BA|G|245
*
8FIZ|1|BA|C|253
8FIZ|1|BA|G|254
8FIZ|1|BA|A|255
8FIZ|1|BA|A|256
8FIZ|1|BA|C|257
8FIZ|1|BA|G|258

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BO

50S ribosomal protein L35

Chain BT

50S ribosomal protein L15