IL_8FIZ_088

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

8FIZ|1|BA|G|776, 8FIZ|1|BA|A|788, 8FIZ|1|BA|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_088 not in the Motif Atlas

Homologous match to IL_5J7L_265

Geometric discrepancy: 0.0996

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

8FIZ|1|BA|G|775
8FIZ|1|BA|G|776
8FIZ|1|BA|G|777
*
8FIZ|1|BA|C|787
8FIZ|1|BA|A|788
8FIZ|1|BA|A|789
8FIZ|1|BA|U|790
8FIZ|1|BA|C|791

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L2

Chain BN

50S ribosomal protein L34

Chain BZ

50S ribosomal protein L22