IL_8FIZ_100

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_100 not in the Motif Atlas

Geometric match to IL_5J7L_278

Geometric discrepancy: 0.1344

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8FIZ|1|BA|U|1004
8FIZ|1|BA|C|1005
8FIZ|1|BA|C|1006
8FIZ|1|BA|C|1007
8FIZ|1|BA|A|1008
8FIZ|1|BA|A|1009
8FIZ|1|BA|A|1010
8FIZ|1|BA|G|1011
*
8FIZ|1|BA|C|1150
8FIZ|1|BA|A|1151

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BR

50S ribosomal protein L13

Chain BX

50S ribosomal protein L20