IL_8FIZ_104

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

8FIZ|1|BA|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_104 not in the Motif Atlas

Geometric match to IL_7A0S_038

Geometric discrepancy: 0.3822

The information below is about IL_7A0S_038

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_30229.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

9

Unit IDs

8FIZ|1|BA|G|1031
8FIZ|1|BA|A|1032
8FIZ|1|BA|U|1033
8FIZ|1|BA|G|1034
*
8FIZ|1|BA|C|1121
8FIZ|1|BA|G|1122
8FIZ|1|BA|C|1123

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

5S ribosomal RNA; 5S rRNA

Chain BP

50S ribosomal protein L36

Chain BU

50S ribosomal protein L16