IL_8FIZ_111

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8FIZ|1|BA|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_111 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1327

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8FIZ|1|BA|C|1208
8FIZ|1|BA|U|1209
8FIZ|1|BA|G|1210
8FIZ|1|BA|C|1211
8FIZ|1|BA|G|1212
8FIZ|1|BA|A|1213
8FIZ|1|BA|A|1214
8FIZ|1|BA|G|1215
*
8FIZ|1|BA|U|1234
8FIZ|1|BA|G|1235
8FIZ|1|BA|G|1236
8FIZ|1|BA|A|1237
8FIZ|1|BA|G|1238

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BX

50S ribosomal protein L20