IL_8FIZ_115

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_115 not in the Motif Atlas

Homologous match to IL_5J7L_292

Geometric discrepancy: 0.1231

The information below is about IL_5J7L_292

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8FIZ|1|BA|C|1351
8FIZ|1|BA|U|1352
8FIZ|1|BA|A|1353
8FIZ|1|BA|A|1354
8FIZ|1|BA|G|1355
*
8FIZ|1|BA|C|1376
8FIZ|1|BA|G|1377
8FIZ|1|BA|A|1378
8FIZ|1|BA|U|1379
8FIZ|1|BA|G|1380

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L2

Chain BN

50S ribosomal protein L34